As stated in the previous section, there are a number of files in the edu.harvard.i2b2.crc directory that will need to be edited to reflect the appropriate configuration at your site. The following outlines the steps that need to be taken during the configuration stage of the installation.
There are several steps that will need to be taken.
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Step 1: Change working directory |
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Step 2: Configure the build properties |
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Step 3: Configure the CRC application directory properties |
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Step 4: CRC Loader properties: Configure FR cell properties |
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Step 5: CRC Loader properties: Configure PM cell properties |
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Step 6: CRC Loader properties: Configure data source |
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Step 7: CRC properties: Configure PM cell properties |
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Step 8: CRC properties: Configure data source lookup |
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Step 9: CRC properties: Configure ONT cell properties |
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Step 10: CRC properties: Configure CRC service account properties |
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Step 11: CRC properties: Configure the optional "performance" properties |
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- Analysis Plug-in - Queue Properties
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- Setfinder Query - Timeout Properties
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- Setfinder Query - Lockout Properties
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- Setfinder Query - Temp Table Properties
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Step 12: CRC properties: Configure the data sources |
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The configuration files you will be editing are delivered with examples. In some instances these files may contain multiple examples for the three different database management systems supported by the i2b2. |
Assumptions
The steps in this section are based on the following assumptions
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Linux: your user has the appropriate administrative access to the opt directory. |
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Windows: You are logged into the Windows Command Prompt as an Administrator. |
If you do not have the appropriate access you will have problems running the scripts.
Step 1: Change working directory
The first step in the cell configuration process is to change your working directory to the location of your edu.harvard.i2b2.crc folder.
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| borderColor | #ccc |
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| bgColor | #ffffff |
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| titleBGColor | #DDD9C3 |
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| title | Change Directory Command |
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| borderStyle | solid |
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| CD YOUR_I2B2_SRC_DIR\edu.harvard.i2b2.crc |
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| 3.4.1 Working Directory |
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| 3.4.1 Working Directory |
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| nopanel | true |
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EXAMPLES:
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| Linux Command: CD /opt/i2b2/edu.harvard.i2b2.crc |
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| Windows Command: CD C:\opt\i2b2\edu.harvard.i2b2.crc |
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