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<!DOCTYPE html>
<html>
<head>
    <title>Upgrade i2b2 Software</title>
    <meta charset="UTF-8">
    <meta name="description" content="Upgrading the i2b2 Software to the latest version" />
    <meta name="keywords" content="i2b2, release, upgrade, 1.7.11" />
<!--    <link rel="stylesheet" type="text/css" media="all" href="/stylesheets/i2b2-wiki.css" /> -->
</head>
<body>
    <h1 class="releaseHeading" id="upgradeVersion-current">Upgrade to Release 1.7.11 from 1.7.09c</h1>
</body>
</html>


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i2b2-upgrade-v1711-info
i2b2-upgrade-v1711-info


Version Information

Current Version:1.7.11
Release Date:March 6, 2019
License:Mozilla 2 Open Source License


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i2b2-upgrade-v1711-download
i2b2-upgrade-v1711-download

Download

Descriptioni2b2 Released VersionMinimum Version RequiredDownload LinkRequirements
Files to upgrade the i2b2 server to 1.7.111.7.111.7.09ci2b2_upgrade_1.7.09c_to_1.7.11.zipSee Technical Details section on the i2b2 Upgrades page.
Files to upgrade the i2b2 Database to 1.7.111.7.11

i2b2createdb-1711.zip


Files to upgrade the i2b2 Web Client to 1.7.111.7.11

i2b2webclient-1711.zip



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i2b2-upgrade-v1711-note
i2b2-upgrade-v1711-note

 Notes

    • Release 1.7.11 contains changes to the i2b2 database and Web Client. Therefore in addition to the i2b2upgrade-1711.zip file you also need to download the i2b2createdb-1711.zip and i2b2webclient-1711.zip files. The process of installing the i2b2 Web Client has not changed. If you have questions on how this is done you can find additional information in Chapter 7. i2b2 Web Client Install of the i2b2 Installation Guide.
    • Release 1.7.11  includes  updated i2b2 software license which specifies i2b2 software is now made available under the terms of the Mozilla Public License (MPL) version 2.0. 
    • If you are upgrading to 1.7.11 from a release prior to 1.7.09c it is important you read the upgrade documentation before upgrading your system because earlier upgrades had changes to properties files. When a release has a change to a property file as did 1.7.09 we will make note of it and outline the steps to merge the changes into your local properties file.

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i2b2-upgrade-v1710-howTo
i2b2-upgrade-v1710-howTo

Upgrade Instructions

Excerpt Include
Upgrade i2b2
Upgrade i2b2
nopaneltrue

Knowing some sites have remained on JBoss 7 while some have upgraded to WildFly 10, we have gone ahead and provided Step-by-Step Instructions for both scenarios. For the most part the overall process is very similar. What is different, is the path in which the files reside. Expand the box below to see an example of the differences between the two path names.



UI Expand
titleExample Paths to i2b2.war


Code Block
languagepowershell
titleJBoss 7 path
/opt/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/



Code Block
languagepowershell
titleWildFly 10 path
/opt/wildfly-10.0.0.Final/standalone/deployments/i2b2.war/




Anchor
i2b2-upgrade-v1710-stepByStep-JBoss
i2b2-upgrade-v1710-stepByStep-JBoss

Step-by-Step Instructions for JBoss


UI Steps
sizesmall


UI Step

Stop JBoss


Code Block
languagepowershell
titleLinux Example
collapsetrue
$ /opt/jboss-as-7.1.1.Final/bin/jboss-cli.sh --connect command=:shutdown




UI Step

Backup your existing i2b2.war directory


UI Expand
titleLinux

On Linux, make a copy of /opt/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war/ and save it to a different location outside of /opt/jboss-as-7.1.1.Final/ 



UI Expand
titleWindows

On Windows, make a copy of c:\opt\jboss-as-7.1.1.Final\standalone\deployments\i2b2.war\ and save it to a different location outside of c:\opt\jboss-as-7.1.1.Final\ 




UI Step

Delete i2b2.war.deployed file


Code Block
languagepowershell
titleLinux Example
collapsetrue
$ rm /opt/jboss-as-7.1.1.Final/standalone/deployments/i2b2.war.deployed



Warning

DO NOT delete your existing i2b2.war directory. The zip file contains only a subset of files to add/replace in your existing i2b2.war directory.




UI Step

Extract / copy the deployment files from the upgrade zip file to your JBoss deployments directory




UI Step

Copy the deployments directory into your existing JBoss standalone directory, replacing any existing files when prompted.



Code Block
languagepowershell
titleLinux Example
collapsetrue
$ cp -r deployments /opt/jboss-as-7.1.1.Final/standalone




UI Step

Start JBoss



Code Block
languagepowershell
titleLinux Example
collapsetrue
$ /opt/jboss-as-7.1.1.Final/bin/standalone.sh -b 0.0.0.0 &




UI Step

Verify your upgrade



UI Expand
titleTest Web Client

Navigate to your local i2b2 Web Client in your preferred browser and verify you are able to log on and perform standard i2b2 functions. (e.g. Run queries, retrieve previous queries, view breakdowns, etc.)





Anchor
i2b2-upgrade-v1710-stepByStep-WildFly
i2b2-upgrade-v1710-stepByStep-WildFly

Step-by-Step Instructions for WildFly


UI Steps
sizesmall


UI Step

Stop WildFly


Code Block
languagepowershell
titleLinux Example
collapsetrue
$ /opt/wildfly-10.0.0.Final/bin/jboss-cli.sh --connect command=:shutdown




UI Step

Backup your existing i2b2.war directory


UI Expand
titleLinux

On Linux, make a copy of /opt/wildfly-10.0.0.Final/standalone/deployments/i2b2.war/ and save it to a different location outside of /opt/wildfly-10.0.0.Final/ 



UI Expand
titleWindows

On Windows, make a copy of c:\opt\wildfly-10.0.0.Final\standalone\deployments\i2b2.war\ and save it to a different location outside of c:\opt\wildfly-10.0.0.Final\ 




UI Step

Delete i2b2.war.deployed file


Code Block
languagepowershell
titleLinux Example
collapsetrue
$ rm /opt/wildfly-10.0.0.Final/standalone/deployments/i2b2.war.deployed



Warning

DO NOT delete your existing i2b2.war directory. The zip file contains only a subset of files to add/replace in your existing i2b2.war directory.




UI Step

Extract / copy the deployment files from the upgrade zip file to your WildFly deployments directory




UI Step

Copy the deployments directory into your existing WildFly standalone directory, replacing any existing files when prompted.



Code Block
languagepowershell
titleLinux Example
collapsetrue
$ cp -r deployments /opt/wildfly-10.0.0.Final/standalone




UI Step

Start WildFly



Code Block
languagepowershell
titleLinux Example
collapsetrue
$ /opt/wildfly-10.0.0.Final/bin/standalone.sh -b 0.0.0.0 &




UI Step

Verify your upgrade



UI Expand
titleTest Web Client

Navigate to your local i2b2 Web Client in your preferred browser and verify you are able to log on and perform standard i2b2 functions. (e.g. Run queries, retrieve previous queries, view breakdowns, etc.)







Anchor
i2b2-upgrade-zip-contents
i2b2-upgrade-zip-contents

Contents of the Zip File


UI Expand
titlei2b2upgrade-1709c-to-1711.zip


database/

Crcdata/

scripts/

oracle/

query_demo_insert_data.sql

postgresql/

query_demo_insert_data.sql

sqlserver/

query_demo_insert_data.sql

crc_create_query_oracle.sql

crc_create_query_postgresql.sql

crc_create_qyert_sqlserver.sql

Metadata/

ont_oracle.sql

ony_postgresql.sql

ont_sqlserver.sql

Pmdata/

upgrade_oracle_i2b2pm_tables.sql

upgrade_postgresql_i2b2pm_tables.sql

upgrade_sqlserver_i2b2pm_tables.sql


deployments/

deployments/i2b2.war/ 

deployments/i2b2.war/WEB-INF/

deployments/i2b2.war/WEB-INF/lib/

deployments/i2b2.war/WEB-INF/lib/CRC-core.jar

deployments/i2b2.war/WEB-INF/lib/FR-core.jar

deployments/i2b2.war/WEB-INF/lib/i2b2Common-core.jar

deployments/i2b2.war/WEB-INF/lib/IM-core.jar

deployments/i2b2.war/WEB-INF/lib/Ontology-core.jar

deployments/i2b2.war/WEB-INF/lib/ProjectManagement-core.jar

deployments/i2b2.war/WEB-INF/lib/Workplace-core.jar

deployments/i2b2.war/WEB-INF/services/

deployments/i2b2.war/WEB-INF/services/CRC.aar

deployments/i2b2.war/WEB-INF/services/FR.aar

deployments/i2b2.war/WEB-INF/services/IM.aar

deployments/i2b2.war/WEB-INF/services/ProjectManagement.aar

deployments/i2b2.war/WEB-INF/services/Ontology.aar

deployments/i2b2.war/WEB-INF/services/Workplace.aar

deployments/i2b2.war.dodeploy







Release Management RM