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- Source code for ETL process of VCF files
- Example i2b2 ontology & metadata XML
- Example data representation & SQL scripts
- Web Client widgets to submit queries
Downloads
| Filename | Size | Description |
|---|---|---|
 i2b2_genomics_project_v1.zip | 425 kB | Complete package containing example genomics implementation |
Notes
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Users must have the DATA_DEID (de-identified) role to be able to execute a text search on the observation_blob field. |
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The observation_blob field in the observation fact table needs to be full text indexed or the genomics search will not work. |
