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There are two value metadata types that accompany the two variant concepts, SNP and indel. The SNP variant concept has the datatype = GENETIC_VARIANT_SNP and indel variant concept has the datatype = GENETIC_VARIANT_INDEL. The concept code of each type is contained in the TestID tag.SNP:
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<?xml version="1.0"?> |
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<ValueMetadata>...
<ValueMetadata> <Version>3.03</Version> |
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<CreationDateTime>01/28/2016</CreationDateTime> |
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<TestID>SO:0001483</TestID> |
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<TestName>SNP</TestName> |
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<DataType>GENETIC_VARIANT_SNP</DataType> |
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<Oktousevalues /> |
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<MaxStringLength>30</MaxStringLength> |
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<EnumValues /> |
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<UnitValues> <NormalUnits/>...
<UnitValues> <NormalUnits/> </UnitValues> |
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</ValueMetadata> |
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| Code Block | ||||||
|---|---|---|---|---|---|---|
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<?xml version="1.0"?> |
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<ValueMetadata>...
<ValueMetadata> <Version>3.03</Version> |
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<CreationDateTime>01/28/2016</CreationDateTime> |
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<TestID>SO:1000032</TestID> |
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<TestName>indel</TestName> |
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<DataType>GENETIC_VARIANT_INDEL</DataType> |
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<Oktousevalues /> |
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<MaxStringLength>30</MaxStringLength> |
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<EnumValues /> |
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<UnitValues> <NormalUnits/>...
<UnitValues> <NormalUnits/> </UnitValues> |
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</ValueMetadata> |
Sample scripts to create and insert Genomics data in metadata_genomics table can be found inside the package in “Scripts for Sample Data” folder.
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