As stated in the previous section, there are a number of files in the edu.harvard.i2b2.im directory that will need to be edited to reflect the appropriate configuration at your site. The following outlines the steps that need to be taken during the configuration stage of the installation.
| indent |
|---|
|
Step 1: Change working directory |
| indent |
|---|
|
Step 2: Configure the build properties |
| indent |
|---|
|
Step 3: Configure the IM Application Directory properties |
| indent |
|---|
|
Step 4: IM properties: Set schema name for Hivedata tables |
| indent |
|---|
|
Step 5: IM properties: Configure PM Cell Properties |
| indent |
|---|
|
Step 6: IM properties: Check Patient in Project |
| indent |
|---|
|
Step 7: IM properties: Configure third party EMPI services Optional |
| indent |
|---|
|
Step 8: Configure the data sources |
| Info |
|---|
|
The configuration files you will be editing are delivered with examples. In some instances these files may contain multiple examples for the three different database management systems supported by the i2b2. |
Assumptions
The steps in this section are based on the following assumptions
| indent |
|---|
|
Linux: your user has the appropriate administrative access to the opt directory. |
| indent |
|---|
|
Windows: You are logged into the Windows Command Prompt as an Administrator. |
If you do not have the appropriate access you will have problems running the scripts.
Step 1: Change working directory
The first step in the cell configuration process is to change your working directory to the location of your edu.harvard.i2b2.im folder.
| Excerpt |
|---|
| Panel |
|---|
| borderColor | #ccc |
|---|
| bgColor | #ffffff |
|---|
| titleBGColor | #DDD9C3 |
|---|
| title | Change Directory Command |
|---|
| borderStyle | solid |
|---|
| CD YOUR_I2B2_SRC_DIR\i2b2\edu.harvard.i2b2.im |
| Excerpt Include |
|---|
| 3.4.1 Working Directory |
|---|
| 3.4.1 Working Directory |
|---|
| nopanel | true |
|---|
|
EXAMPLES:
| indent |
|---|
| Linux Command: CD /opt/i2b2/edu.harvard.i2b2.im |
| indent |
|---|
| Windows Command: CD C:\opt\i2b2\edu.harvard.i2b2.im |
|
