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Step 2: Set the database properties for the metadata tables
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In the Directory Structure and Schema section of this installation guide we reviewed how the data installation files are structured within the i2b2_omop_data package. Each set of data tables (crcdata, metadata, and workdata) has its own data files for installing the appropriate data. Within each of these directories is a file called db.properties that needs to be updated with your environment variables before we can begin installing the metadata tables.
Steps for setting database properties
Assumptions:
- You are logged into the command line application for your environment. (Linux: Terminal or Shell | Windows: Command Prompt).
- You are familiar with the commands to open a file for editing. (commands are specific to the editor you use)
- You have already changed your working directory to the one that is appropriate for this installation.
Instructions:
1. Open the db.properties file.
2. Set the following properties for the DBMS at your site:
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Oracle Database db.type=oracle db.username=YourCdmDatabaseUser db.password=PasswordForYourCdmDatabaseUser db.server=LocationOfYourCdmDatabase:1521:xe db.driver=oracle.jdbc.driver.OracleDriver db.url=jdbc:oracle:thin:@LocationOfYourCdmDatabase:1521:xe db.project=OMOP PostgreSQL Database db.type=postgresql db.username=YourCdmDatabaseUser db.password=PasswordForYourCdmDatabaseUser db.driver=org.postgresql.Driver db.url=jdbc:postgresql://LocationOfYourCdmDatabase/YourCdmDatabase db.project=OMOP SQL Server Database db.type=sqlserver db.username=YourCdmDatabaseUser db.password=PasswordForYourCdmDatabaseUser db.driver=com.microsoft.sqlserver.jdbc.SQLServerDriver db.url=jdbc:sqlserver://LocationOfYourCdmDatabase:1433;database=NameOfYourCdmDatabase db.project=OMOP |
3. Save the changes and close the file.
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<div class="i2b2-panel"> <table class="i2b2-tip"> <colgroup> <col width="24"> <col> </colgroup> <tbody> <tr> <td> <img src="https://community.i2b2.org/wiki/download/attachments/14091764/icon_tip.png" width="16" height="16" align="absmiddle" alt="info" border="0"> </td> <td> <b>Tip</b> <br><br>To save yourself steps, DO NOT close your Command Prompt window as you will be continuing to use it throughout the remainder of the installation. </td> </tr> </tbody> </table> </div> |
