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When you first start the IMT, you will see a window similar to the screendump screen dump below. Most windows within the IMT don't contain entries. IMT is an Eclipse-based application, so we will stick to their terminology, calling these windows "views".
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If you click on a staging server, the IMT will show all i2b2 projects that the database account can read. i2b2 projects correspond to at least one database or schema and start with a leading string "I2B2".
Reference
Menu File
Exiting Exits the program.
Menu Server
| Info |
|---|
A Staging Server is an i2b2-Database-Server , that is used to upload data to. |
Name | Description |
|---|---|
Add Staging I2B2Server... | Creates a new Staging Server. |
Edit Staging I2B2Server... | Edits the selected Staging Server. |
Delete Staging I2B2Server | Deletes the selected Staging Server. |
New Datasource Server... | Creates a new Datasource Server. |
Edit Datasource Server... | Edits the selected Datasource Server. |
Delete Datasource Server | Deletes the selected Datasource Server. |
Import Staging I2B2Server... | Lets Let's you import a previously exported Staging Server. |
Export Staging I2B2Server... | Lets Let's you export the selected Staging Server. |
| Info |
|---|
It's a good idea to backup |
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staging servers regularly. Additionally, export/import is useful for copying the configuration to another instance of the IMT. |
Menu Options
Name | Description | Default |
|---|---|---|
Target Folder Name: | The root i2b2 folder name where your data get imported to. | Patientdata |
PIDGen URL | The URL where your TMF PID generator is running (rarely used). |
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Export Log Location | The location where the log is stored after exporting it, e.g. /home/idrt/IDRTworkspace/logs/export.log |
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Syso Log | Activates extended logging | Unchecked |
Syso Log Location | The location where the sys log is stored. |
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Filter Projects | Filters i2b2 projects to exclude e.g. i2b2pm, i2b2hive, etc | Checked |
Hide Temporary/Secondary Tables | Only for Oracle: hides temporary/secondary tables. | Unchecked |
Show Total Number of Patients | Shows the c_totalnum in the Mapping Editor | Checked |
Guess-Rows | The number of rows the CSV importer should check to guess the datatypes of the columns. | 50 |
| Note |
|---|
In some cases, specifying a Syso Log Location results in an empty and non-respnding responding import browser view after restart. Closing the import browser view and reopening the view in the view menu solves the problem. |
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